PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118955.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 597aa    MW: 66796.8 Da    PI: 9.9459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07495544147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009118955.1 495 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 544
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735490549IPR017930Myb domain
SMARTSM007173.7E-6494547IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9495545IPR009057Homeodomain-like
CDDcd116601.35E-15496546No hitNo description
SuperFamilySSF466892.96E-15496577IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVLQRRLDHG FNGYEVPPTP RATRSPRSAF KKNQISSFDL LAAVAGDLLL ESGGNSSSSS  60
NNAIGDTNEE DQCAVKTKPH QTVVEEINCD HIHDNDAERR FFVSEILPKT HRSPSPPKDF  120
HFGSTSGITS DSSEKLGTQG LGQSVCFRSE TNDKISMHGR LINDCEPELS RDIIAENKHH  180
IGSGFKKPVP PPVCSDDIDL LNDDGENFSA RYTTKTFRST LRIGDRRIKK VLASKYCKLS  240
SKQKETTVTN SDMDLKPSYY NKKHCLKSFR SERRYPIKKR RYFDGYTASQ SEETPKRGSA  300
FMSTIACQKQ PALQSRDSHV KLGIKSFKVP ELFIEIPETA TVGSLKRTVL EAVTTILEGG  360
LRIGVLVHGK KVRDDSKMLL QNGISLDTLS DTLGFCLEPN PPHSTKPLAP EDSDCLRPFN  420
VPHTLTRCLA SQGKHAKPSN SVESDLDSKP SAHNRAKPVY SRALIPVAPP LHAQALNVVP  480
PRKPKRSEVA QRRIRRPFSV AEVEVLVQAV ERLGTGRWRD VKLRAFDNAK HRTYVDLKDK  540
WKTLVHTARI SPQQRRGEPV PQELLDRVLM AHAYWSQQQG KQQLLEGHQK LETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-564825844106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118955.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
RefseqXP_022548833.10.0telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM4DGG10.0M4DGG1_BRARP; Uncharacterized protein
STRINGBra015585.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2