PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118956.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 596aa    MW: 66780.9 Da    PI: 9.9904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07494543147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009118956.1 494 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 543
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735489548IPR017930Myb domain
SMARTSM007173.7E-6493546IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9494544IPR009057Homeodomain-like
CDDcd116601.54E-15495545No hitNo description
SuperFamilySSF466892.96E-15495576IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS  60
SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNDAER RFFVSEILPK THRSPSPPKD  120
FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH  180
HIGSGFKKPV PPPVCSDDID LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL  240
SSKQKETTVT NSDMDLKPSY YNKKHCLKSF RSERRYPIKK RRYFDGYTAS QSEETPKRAF  300
MSTIACQKQP ALQSRDSHVK LGIKSFKVPE LFIEIPETAT VGSLKRTVLE AVTTILEGGL  360
RIGVLVHGKK VRDDSKMLLQ NGISLDTLSD TLGFCLEPNP PHSTKPLAPE DSDCLRPFNV  420
PHTLTRCLAS QGKHAKPSNS VESDLDSKPS AHNRAKPVYS RALIPVAPPL HAQALNVVPP  480
RKPKRSEVAQ RRIRRPFSVA EVEVLVQAVE RLGTGRWRDV KLRAFDNAKH RTYVDLKDKW  540
KTLVHTARIS PQQRRGEPVP QELLDRVLMA HAYWSQQQGK QQLLEGHQKL ETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-564815834106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118956.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X3
RefseqXP_022548834.10.0telomere repeat-binding protein 5-like isoform X3
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A397XID80.0A0A397XID8_BRACM; Uncharacterized protein
STRINGBra015585.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2