PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119121.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 140aa    MW: 15405.6 Da    PI: 8.2177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-0528671054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ ++++ L++++ +      +K + a++L  Av+YI  L
  XP_009119121.1 28 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAVHYIEFL 67
                    88999**************99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7631867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-51972No hitNo description
SuperFamilySSF474591.7E-111980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-91981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MMMENKRNVV CSLEESNIKR HKSDLSSKER KDKVGERISA LQQIVSPYGK TDTASVLLDA  60
VHYIEFLHEQ VKVLSAPYLQ TVSTATLVEI EQYSLSNRGL CLVPMESTAG VAQSNGADIW  120
ASVKGPPSPA LNVKSQSPFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.213320.0bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530541e-129AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119120.11e-100PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU22e-82BH153_ARATH; Transcription factor bHLH153
TrEMBLM4DG273e-99M4DG27_BRARP; Uncharacterized protein
STRINGBra015450.1-P1e-100(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-85bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]