PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119346.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 297aa    MW: 33775.6 Da    PI: 7.1694
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.5e-16209265258
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le eN++L ke+ee + e +k
  XP_009119346.1 209 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLERENEQLLKEIEEKTRERYK 265
                     5789********************************************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.8E-13207268No hitNo description
SMARTSM003381.4E-12208273IPR004827Basic-leucine zipper domain
PfamPF001701.2E-14209267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208210262IPR004827Basic-leucine zipper domain
CDDcd147071.77E-16212258No hitNo description
SuperFamilySSF579597.5E-10212263No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MISSLPCPKK KSTFHNQTPI VSQFSIETEM ASFKMMSSST SRNSDLSRRN SSSASSSPTV  60
RSNHLRRDPH ADHSRISFGY GGGNDATLHD YNFASDSLDV DRSNGDRNSV NGGGRKSVDD  120
VWKEIVSGEK KTVMKEEAQD EYMMTLEDFL AQAAEMDGND DEIDVKIPMS LSGTFDYPMM  180
PQQNNQVEMV EGSTRRKRGR VMVEAMDKAA AQRQKRMIKN RESAARSRER KQAYQVELET  240
LAAKLERENE QLLKEIEEKT RERYKNLMEQ LIPVDDEKRK PSSSSSRSLS RSHSLEW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.55660.0bud| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119346.10.0PREDICTED: G-box-binding factor 4
RefseqXP_013666408.10.0G-box-binding factor 4-like
SwissprotP427771e-110GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A397XNG00.0A0A397XNG0_BRACM; Uncharacterized protein
STRINGBra015281.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-101G-box binding factor 4