PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119652.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 460aa    MW: 51196.1 Da    PI: 5.7097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-3451433127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +GfrF Ptdee+v++y++ k +g +  ++++++i+ vdi++++Pw+Lp k ++k++++  wyfF ++++ ++  ++++r+t+sg+W++tg ++++
  XP_009119652.1   5 VGFRFIPTDEEIVDYYIRLKNRGGSdtNHVDKAIRAVDICSFDPWELPcKsRIKSRDEvVWYFFGCKKQMHN--NKQRRSTASGFWSKTGDTTPI 97 
                     7*****************999998876777788**************96347777766799***99988765..6889999************** PP

             NAM  93 lsk..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                     ++k  ++e++g k+++vf          k ++++ +k+dWvmhey 
  XP_009119652.1  98 IRKkgDHEKIGEKRVFVFKysskipggsKSKSKSKSKSDWVMHEYV 143
                     **9777788*********889988888767788889*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.2693166IPR003441NAC domain
SuperFamilySSF1019418.5E-364166IPR003441NAC domain
PfamPF023655.4E-205143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MENRVGFRFI PTDEEIVDYY IRLKNRGGSD TNHVDKAIRA VDICSFDPWE LPCKSRIKSR  60
DEVVWYFFGC KKQMHNNKQR RSTASGFWSK TGDTTPIIRK KGDHEKIGEK RVFVFKYSSK  120
IPGGSKSKSK SKSKSDWVMH EYVATFSSPD SQTMMMTYTV CKVMFKGDPT DLPSSSAAAS  180
VGSGEIEQNH SPITHMNSNS SGGLSTETEV QNPNQTTTVS LIPVNNSSEG LSTEAEVEYR  240
DRGGRSHQIT SSISLVPHVN NNNSGGLSTE TEVDPRLFSG FLYLEEDARI EDATLRAFNS  300
LPNNDDAEEQ EELVNLWSMQ EDRNDHRPKM PLTGFISDDD DSDSESLYAT TTCSIKSSTT  360
CVSFASSNPP IDQIIYLPES PRSTIESVSL TQEVSKALGA NSAISEKKMS PCDDDAQVSE  420
IGGDQMGQEM VIKNKRAGFI YRMIQKFAKK IKLCSCVSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-17614218138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119652.10.0PREDICTED: NAC domain-containing protein 5-like isoform X1
TrEMBLM4EWW50.0M4EWW5_BRARP; Uncharacterized protein
STRINGBra033300.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.12e-56NAC domain containing protein 4