PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119654.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 384aa    MW: 43565.8 Da    PI: 4.8084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.75.7e-3741372127
             NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     p+G+rFhPtdee+v +y ++k +e+++ +++ev+++vdiy+++Pw+L   ++++++++ wyfF +++ ++++g+r++r tksg+Wk+tg + +++
  XP_009119654.1   4 PVGYRFHPTDEEIVGDYVRPKnIESNTSHVDEVMNTVDIYEFDPWELLckSRINSTDEVWYFFGCKKDQQNRGERQSRRTKSGFWKKTGVTMDIM 98 
                     89*****************99567777889999**************64358888999************************************* PP

             NAM  94 sk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                     +k  ++e++g k+++vf        p+  k+dWvmhey 
  XP_009119654.1  99 RKrgNREKIGEKRVFVFQyskILGGPSKPKSDWVMHEYV 137
                     *9877888*********854322567778*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-382160IPR003441NAC domain
PROSITE profilePS5100540.9323160IPR003441NAC domain
PfamPF023653.9E-214137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGDPVGYRFH PTDEEIVGDY VRPKNIESNT SHVDEVMNTV DIYEFDPWEL LCKSRINSTD  60
EVWYFFGCKK DQQNRGERQS RRTKSGFWKK TGVTMDIMRK RGNREKIGEK RVFVFQYSKI  120
LGGPSKPKSD WVMHEYVATF LSPNFPNQTM TYTVCKVMFK GDERVLSSSS SAVAGEIEHD  180
LSLIPLVDTY SAGLSIETEV DPRQFTGFLH LEEETQFEDE MFRVFNNLPT DDWNSLFNND  240
EEQGNTMFMQ EDRNDYRPKK SLTGVFVSDD DSDSDSITTT CSLKSSSTCV TFGSSNPPIY  300
LPDSPCSTIE SVSLTQEVSK ALGANSAISE KKMSPCDDDA QVSEVGGDQM GQEMVVKNKR  360
AGFIYRMVQK FAKKIKLCSC VSRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-18413618140NO APICAL MERISTEM PROTEIN
1ut4_B3e-18413618140NO APICAL MERISTEM PROTEIN
1ut7_A3e-18413618140NO APICAL MERISTEM PROTEIN
1ut7_B3e-18413618140NO APICAL MERISTEM PROTEIN
3swm_A3e-18413621143NAC domain-containing protein 19
3swm_B3e-18413621143NAC domain-containing protein 19
3swm_C3e-18413621143NAC domain-containing protein 19
3swm_D3e-18413621143NAC domain-containing protein 19
3swp_A3e-18413621143NAC domain-containing protein 19
3swp_B3e-18413621143NAC domain-containing protein 19
3swp_C3e-18413621143NAC domain-containing protein 19
3swp_D3e-18413621143NAC domain-containing protein 19
4dul_A3e-18413618140NAC domain-containing protein 19
4dul_B3e-18413618140NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAPTransfer from AT1G02250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119654.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-122NAC5_ARATH; NAC domain-containing protein 5
TrEMBLM4EWW80.0M4EWW8_BRARP; Uncharacterized protein
STRINGBra033303.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-114NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]