PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119658.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 475aa    MW: 54032.2 Da    PI: 5.8479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93e-3041352128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pGf+F+P deelv +yL++k+ g++  ++ vi+e++i++++PwdL+  +k+k+++  wyf s  +++     r++r+t sg Wk tg   +v +
  XP_009119658.1   4 KPGFEFRPYDEELVGFYLRQKLLGNHSLVDGVIREIKICSLDPWDLRfqSKIKSRDPVWYFLSLIENN---RGRQSRTTPSGSWKLTGDPVNVND 95 
                     59************************999899**************853488888889***9998875...569********************* PP

             NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +       + ++g k++L+f k+++++++ ++Wvmhe + 
  XP_009119658.1  96 RwgnltgFRGKIGYKRVLTFSKAKSSSSSVSEWVMHELHY 135
                     97766664455**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.9173156IPR003441NAC domain
SuperFamilySSF1019414.05E-334156IPR003441NAC domain
PfamPF023659.7E-175134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVEKPGFEFR PYDEELVGFY LRQKLLGNHS LVDGVIREIK ICSLDPWDLR FQSKIKSRDP  60
VWYFLSLIEN NRGRQSRTTP SGSWKLTGDP VNVNDRWGNL TGFRGKIGYK RVLTFSKAKS  120
SSSSVSEWVM HELHYTHTDL PEHKRTTYVI CRLEYKGDDV NILSTPTFAP TMANSASSAV  180
DQSLQGNSGH YNTLSEYDSG YQFNGNSDMQ QSFQGYSEYF NPTSEYGLAN QSNNWFSNLQ  240
QQQVPYSAPY QDDSDVWRQV VEEDWPSLID ERTCMRVDLI HHRPKKPVTG IFVGDSSDDD  300
TDSTIGKGTW SSTDSVGSKD VPYHAPKDAT PSLSTVEPLY NDSSDDDTDS TIGKGTWRST  360
DSVGSNNVPY HAPKYATPSL STVEPLYNDE PQEQPKQLML QLQGKQKVIN KQKSECEWKR  420
AEDSIKKAPS TYAVKQSWIV LEEISQRKSR WIYLKNIVGL LLFIIFIIGW IILLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-12513217137Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.173790.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119658.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119658.10.0PREDICTED: NAC domain-containing protein 1-like isoform X1
SwissprotQ0WV961e-137NAC1_ARATH; NAC domain-containing protein 1
TrEMBLM4EWW10.0M4EWW1_BRARP; Uncharacterized protein
STRINGBra033296.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-106NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]