PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009119789.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 249aa MW: 27044.3 Da PI: 7.7792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	33	151	10	127
NAM 10 tdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 td+e+v++y++ k g + + ++++i+ vdi++++Pw+Lp k + +++++ wyfF+++d+ +g+r++r+tksg+Wk+tg + ++++k ++e XP_009119789.1 33 TDQEIVNYYIRLKNLGGSdtNYVDKAIRAVDICSFDPWELPsKsRRESRDQVWYFFCRKDN---RGERQSRKTKSGFWKKTGPTMDIFQKrgDRE 124 9********998877754445667***********53355557789**988...589******************988788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 ++g k++Lvf+ ++ +k+dWvmhey XP_009119789.1 125 KIGEKRVLVFHLSGSK--SKSDWVMHEYV 151 9******54443..59******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.107	24	171	IPR003441	NAC domain
Pfam	PF02365	5.6E-19	31	151	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-33	33	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTAHSVRQPN LLAVLISLGL TLFHFVALTV NTTDQEIVNY YIRLKNLGGS DTNYVDKAIR 60 AVDICSFDPW ELPSKSRRES RDQVWYFFCR KDNRGERQSR KTKSGFWKKT GPTMDIFQKR 120 GDREKIGEKR VLVFHLSGSK SKSDWVMHEY VATFLPPTDQ MTYTLCKLKF KGDASDLPSS 180 SSGGDGGGGD GGCGDDGGGG GCDGGGGDGC DGGGGGGGID EHNQYLITHM NNSGGYEVGS 240 LCLLFRAKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-14	33	150	26	140	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-14	33	150	26	140	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-14	33	150	26	140	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-14	33	150	26	140	NO APICAL MERISTEM PROTEIN
3swm_A	7e-14	33	150	29	143	NAC domain-containing protein 19
3swm_B	7e-14	33	150	29	143	NAC domain-containing protein 19
3swm_C	7e-14	33	150	29	143	NAC domain-containing protein 19
3swm_D	7e-14	33	150	29	143	NAC domain-containing protein 19
3swp_A	7e-14	33	150	29	143	NAC domain-containing protein 19
3swp_B	7e-14	33	150	29	143	NAC domain-containing protein 19
3swp_C	7e-14	33	150	29	143	NAC domain-containing protein 19
3swp_D	7e-14	33	150	29	143	NAC domain-containing protein 19
4dul_A	5e-14	33	150	26	140	NAC domain-containing protein 19
4dul_B	5e-14	33	150	26	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119789.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022559040.1	1e-101	NAC domain-containing protein 5-like
Swissprot	O81914	4e-60	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWX0	1e-173	M4EWX0_BRARP; Uncharacterized protein
STRING	Bra033305.1-P	1e-174	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	6e-63	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]