 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009120074.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GRAS |
| Protein Properties |
Length: 489aa MW: 54413.7 Da PI: 5.9716 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009120074.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 316 | 8.2e-97 | 114 | 482 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91
lv+lL+++A+a d++ l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++ + ++ ++ p ++ + ++ ++++ a+ +++++sP++
XP_009120074.1 114 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFPMLQNMSPYI 206
689******997554433349***********6666659*************987777..66666662555555566999999999********* PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
+f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp +lRiT+++++++g s +++e g+rL+ fAe++g pf+++
XP_009120074.1 207 NFGYLTATQAILEAVQYERRIHIVDYDITDGVQWPSLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-C 300
*********************************************765446*********999999999***********************9.7 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276
+ +++++++L++ +gEa+++n+vl+l r+ +++ ++ ++L+ k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+
XP_009120074.1 301 RMDSDTFNPSSLKLVRGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLLHQFSAIFDSLEAG-- 390
889*****************************98888887...9**********************9**************************.. PP
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
+r +vEr+++g++++ +++ ++ e++++W +l + GFkpv++s + +qaklll+ ++ dgy vee ++ lvlgWk+r+Lvs+
XP_009120074.1 391 ---PARGFVERVIFGPWVSGWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGVEELgQNGLVLGWKSRRLVSA 479
...9*******************99997..99*************************************.******98789999*********** PP
GRAS 371 SaW 373
S+W
XP_009120074.1 480 SFW 482
*** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MHCPFFFIIS MTMNHPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI 60
ESMMSDKGAT TESPPILPCY HGQEGIFNSS STGLSMADEL DHDVEADESK GLRLVHLLVA 120
AADASIGADK TRELTRVLLA KLKDMTSTND RTNMERLAAH FTNGLSKLHK EANVQRQYGP 180
HQHPDVHDRV DVMLAFPMLQ NMSPYINFGY LTATQAILEA VQYERRIHIV DYDITDGVQW 240
PSLMQALVSR NTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC 300
RMDSDTFNPS SLKLVRGEAV VINCVLHLPR FSHQPPNSII SFLSEAKTLN PKLVTLVHEE 360
VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG PARGFVERVI FGPWVSGWLT RIAITAEVES 420
FASWPLWLAT NGFKPVEVSF ANRCQAKLLL SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS 480
FWASCESSE
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242554 | 0.0 | JX242554.1 Brassica rapa isolate BrNSP2chiifu nodulation signaling pathway 2-like protein gene, complete cds. |
