 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009120075.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GRAS |
| Protein Properties |
Length: 459aa MW: 51256.2 Da PI: 6.3214 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009120075.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 310.1 | 5.1e-95 | 99 | 452 | 14 | 373 |
GRAS 14 sgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
++ el++ lLa+l+++ s ++ ++m+Rlaa+ft++L++ + ++ ++ p ++ + ++ ++++ a+ +++++sP+++f++lta qaIleav
XP_009120075.1 99 DKTRELTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFPMLQNMSPYINFGYLTATQAILEAV 191
56677999*********6666659*************987777..66666662555555566999999999************************ PP
GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp +lRiT+++++++g s +++e g+rL+ fAe++g pf+++ + +++++++L++
XP_009120075.1 192 QYERRIHIVDYDITDGVQWPSLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-CRMDSDTFNPSSLKLV 285
******************************765446*********999999999***********************9.7889************ PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellg 291
+gEa+++n+vl+l r+ +++ ++ ++L+ k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+ +r +vEr+++g
XP_009120075.1 286 RGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLLHQFSAIFDSLEAG-----PARGFVERVIFG 372
*****************98888887...9**********************9**************************.....9*********** PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
++++ +++ ++ e++++W +l + GFkpv++s + +qaklll+ ++ dgy vee ++ lvlgWk+r+Lvs+S+W
XP_009120075.1 373 PWVSGWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGVEELgQNGLVLGWKSRRLVSASFW 452
********99997..99*************************************.******98789999************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MHCPFFFIIS MTMNHPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI 60
ESMMSDKGAT TESPPILPCY HGQEGIFNSS STDASIGADK TRELTRVLLA KLKDMTSTND 120
RTNMERLAAH FTNGLSKLHK EANVQRQYGP HQHPDVHDRV DVMLAFPMLQ NMSPYINFGY 180
LTATQAILEA VQYERRIHIV DYDITDGVQW PSLMQALVSR NTGPSAQHLR ITALSRATNG 240
KKSVAAVQEA GRRLTAFAES IGQPFSYHHC RMDSDTFNPS SLKLVRGEAV VINCVLHLPR 300
FSHQPPNSII SFLSEAKTLN PKLVTLVHEE VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG 360
PARGFVERVI FGPWVSGWLT RIAITAEVES FASWPLWLAT NGFKPVEVSF ANRCQAKLLL 420
SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS FWASCESSE
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242554 | 0.0 | JX242554.1 Brassica rapa isolate BrNSP2chiifu nodulation signaling pathway 2-like protein gene, complete cds. |
