PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120089.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 154aa    MW: 18105.1 Da    PI: 9.8992
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind57.24.6e-186972101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkelle 95 
                     F + +ye+++d++l+++isws++++sfv++d++e+ +k+Lp+   h +++ F+  +++YgF +++ +e+         eF h++ F +gk ell+
  XP_009120089.1   6 FYSDIYEVVDDPSLDSIISWSKSNKSFVIWDPKELVEKILPRLL-HYKLSHFITEIEIYGFVRIEGSEH--------LEFGHEQyFVRGKPELLT 91 
                     8899*************************************985.88999**************99996........6****9989********* PP

                     XXXXXX CS
    HSF_DNA-bind  96 kikrkk 101
                     k++ ++
  XP_009120089.1  92 KMRYQA 97 
                     998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-19296IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.37E-19394IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-20594IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-6629IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-18694IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-65668IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGMCSFYSDI YEVVDDPSLD SIISWSKSNK SFVIWDPKEL VEKILPRLLH YKLSHFITEI  60
EIYGFVRIEG SEHLEFGHEQ YFVRGKPELL TKMRYQAVSN MVKKGRERAE KKISVGDQMM  120
RCRYAPIRFN KIKRSSKKSS KKAKAITPLE TIYE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120089.11e-111PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_013666914.11e-111heat stress transcription factor A-4a
TrEMBLA0A078FS421e-109A0A078FS42_BRANA; BnaA10g09840D protein
TrEMBLA0A3P6CYZ71e-109A0A3P6CYZ7_BRACM; Uncharacterized protein
TrEMBLM4CFA01e-109M4CFA0_BRARP; Uncharacterized protein
STRINGBra002882.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.13e-22Winged helix-turn-helix transcription repressor DNA-binding