PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009120174.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 434aa MW: 49178.6 Da PI: 9.2452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009120174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.4	2.4e-35	42	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptd+elv e+L++kv+gk+ + + +i+ +i++++P++Lp v+++ + +fF+k +++y+tg+rk+r+ XP_009120174.1 42 LPAGVKFDPTDQELV-EHLEAKVKGKEgnkkwfpshplI---DefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRKRRKii 131 799**********.99*****887777765432...133223555535******.555666799**************889 PP NAM 78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l XP_009120174.1 132 qtehdseltgsSSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194 9999999987766889********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-38	34	213	IPR003441	NAC domain
PROSITE profile	PS51005	31.516	42	213	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	43	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MKNTCNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE 60 AKVKGKEGNK KWFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY 120 TTGTRKRRKI IQTEHDSELT GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNISWSEQNV SSKGLIGTGA 240 GDEICGVAAA LQSLGSGDVI SRVNTNPFTR ALDEGTAEAS KGRENRLVSG TCEEVHDGII 300 RSSSSTSYHM IHDHNQHHQT GERREFHIPS SSSYHESIFN ITSTVPFQGS IIWFGIRRLN 360 HGLHIYLHRR GKFRSKSTAK RRLVNVSTIL EPNRDRWSKP EILTEPEGSR EVLQTMGLAF 420 DQCWKCLVIY SLCH

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MKNTCNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE  60
AKVKGKEGNK KWFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY  120
TTGTRKRRKI IQTEHDSELT GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNISWSEQNV SSKGLIGTGA  240
GDEICGVAAA LQSLGSGDVI SRVNTNPFTR ALDEGTAEAS KGRENRLVSG TCEEVHDGII  300
RSSSSTSYHM IHDHNQHHQT GERREFHIPS SSSYHESIFN ITSTVPFQGS IIWFGIRRLN  360
HGLHIYLHRR GKFRSKSTAK RRLVNVSTIL EPNRDRWSKP EILTEPEGSR EVLQTMGLAF  420
DQCWKCLVIY SLCH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009120174.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607355.1	0.0	PREDICTED: uncharacterized protein LOC106313958 isoform X3
Swissprot	Q9M0F8	1e-114	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M4CF20	0.0	M4CF20_BRARP; Uncharacterized protein
STRING	Bra002802.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14928	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	0.0	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]