PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120236.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 246aa    MW: 27891.3 Da    PI: 4.3586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-145699755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  XP_009120236.1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.83E-135299No hitNo description
SuperFamilySSF474593.14E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDNVDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EESKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDSGPSRSL IEVLELKVTF MGERTVVVNV TCNKRTDTMV  180
KLCEVFESLN LKIITSNLNS FSGMIFNTVF VEAEEEEQEV VRLKIETGIG AYNETQSPTL  240
SIDSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1454108963Transcription factor MYC2
5gnj_B4e-1454108963Transcription factor MYC2
5gnj_E4e-1454108963Transcription factor MYC2
5gnj_F4e-1454108963Transcription factor MYC2
5gnj_G4e-1454108963Transcription factor MYC2
5gnj_I4e-1454108963Transcription factor MYC2
5gnj_M4e-1454108963Transcription factor MYC2
5gnj_N4e-1454108963Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120236.11e-180PREDICTED: transcription factor bHLH35
RefseqXP_013667042.11e-180transcription factor bHLH35
RefseqXP_018510725.11e-180PREDICTED: transcription factor bHLH35
SwissprotQ2HIV91e-166BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078HIG81e-179A0A078HIG8_BRANA; BnaA10g11180D protein
TrEMBLA0A397XJV01e-179A0A397XJV0_BRACM; Uncharacterized protein
TrEMBLA0A3P6EEA31e-179A0A3P6EEA3_BRAOL; Uncharacterized protein
TrEMBLM4CEX41e-179M4CEX4_BRARP; Uncharacterized protein
STRINGBra002756.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-143bHLH family protein