PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120452.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 569aa    MW: 63298.4 Da    PI: 8.8502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07470519147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + +       +Rt  ++k++w ++
   XP_009120452.1 470 RRPFSVTEVEALVQAVEKLGTGRWRDVKHSAFedaDHRTYVDLKDKWKTL 519
                      678999*********************999999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.54E-8293365IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.2E-5295366No hitNo description
PROSITE profilePS5005310.266298367IPR000626Ubiquitin domain
PROSITE profilePS5129415.914465524IPR017930Myb domain
SMARTSM007176.2E-7469522IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-10470520IPR009057Homeodomain-like
SuperFamilySSF466893.34E-15471552IPR009057Homeodomain-like
CDDcd116601.84E-16472521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009873Biological Processethylene-activated signaling pathway
GO:0046686Biological Processresponse to cadmium ion
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0031965Cellular Componentnuclear membrane
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MVSHKCVEEF SLQFPANARA PRSARKKRSF KKEEITENDK TCAIDLLATV AENLLSETGS  60
SHMSIDKPVE DHCLVKEEFP VEDKPLKPAT LPEFNPYQGS SMSPCGFSSV ISGKVEIEAE  120
GFSHSGGIDS CQAGQDLKPS VDGGAVVLDA RPNGVGSLGG SSSRTKVPSM GAGVSLGALD  180
DVHMFSRDDD ENFSGYICPR VTKKSPRSVP RVGDRRIRKI LASRHWKGGS RHSEAKSWRN  240
YYLHHQRSYP IKKRKYFDHI SDSVSDDYRL RSKMQRGSRA VSTMKGPGAS FVSSDSHVRL  300
RIKSFRVPEL FVEIPETATV GSLKRMVMEA VSTLLSDGHR VGLMVQGKKV RDDNKTLHQT  360
GISQDNTHLD SLDFSLEPSS EAPHLLSSNP SGHVCEELSM CRTSDMDTLF KTEPDLALFP  420
SGSFDKETAA DDSKALVHAA LTELSPPQPP RHKSNKQQQQ QQQTAQRRMR RPFSVTEVEA  480
LVQAVEKLGT GRWRDVKHSA FEDADHRTYV DLKDKWKTLV HTAKISPQQR RGEPVPQELL  540
NRVLNAHGYW SQQHMETLAL PKPESVLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2aje_A3e-51466551994telomere repeat-binding protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245254QRSYPIKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.7890.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and leaves. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences 5'-GGTTTAG-3'. At least 4 repeats of telomeric sequences are required for binding. Induces DNA bending.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120452.10.0PREDICTED: telomere repeat-binding protein 1 isoform X1
RefseqXP_009120453.10.0PREDICTED: telomere repeat-binding protein 1 isoform X1
SwissprotQ8L7L80.0TRP1_ARATH; Telomere repeat-binding protein 1
TrEMBLM4CED50.0M4CED5_BRARP; Uncharacterized protein
STRINGBra002566.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM381255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-94TRF-like 2
Publications ? help Back to Top
  1. Chen CM,Wang CT,Ho CH
    A plant gene encoding a Myb-like protein that binds telomeric GGTTTAG repeats in vitro.
    J. Biol. Chem., 2001. 276(19): p. 16511-9
    [PMID:11278537]
  2. Sue SC, et al.
    Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix.
    J. Mol. Biol., 2006. 356(1): p. 72-85
    [PMID:16337232]
  3. Lin Z,Ho CW,Grierson D
    AtTRP1 encodes a novel TPR protein that interacts with the ethylene receptor ERS1 and modulates development in Arabidopsis.
    J. Exp. Bot., 2009. 60(13): p. 3697-714
    [PMID:19567478]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]