PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120530.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 432aa    MW: 47342.6 Da    PI: 8.4716
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17115164155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009120530.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 164
                     78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-15115173IPR016177DNA-binding domain
CDDcd000181.96E-11115171No hitNo description
PfamPF008471.0E-8115164IPR001471AP2/ERF domain
PROSITE profilePS5103217.332116172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-17116172IPR001471AP2/ERF domain
SMARTSM003801.1E-30116178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDESVTSNSS LVNAEASSCI DGEEEMCSTP AVKFQFEILK GGGREDEEGR SEVMTKEFFP  60
VEKGANFVDL SGQSSRSSVD ISFQRGNQGG DAARVMQPPA QPVKKSRRGP RSKSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV KFRGLEADIN FVISDYEEDL  180
KQMANLSKEE VVQVLRRQSS GFSRNNSRYQ GANLPKIGGW GGAQMEQLNG NMAYDKATAT  240
KWNGREAASL IEPHASRIIS ETANVKLDLN LGISLSLGDS PKQNLNNIVC GRNSKMENHM  300
AASTCDTPFN FLKRGSDHLI NRHVHPSALF SPMERTPREG FMPGSPQSFP VRTWQAQDQP  360
SGGTATTATA STLLSNAASS GFSHSATRPP SSSTASLHPS QPFLNMNIPG LYVIHPSQHQ  420
YHHDINRSQP PP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120529.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X1
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLM4CE790.0M4CE79_BRARP; Uncharacterized protein
STRINGBra002510.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2