PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120643.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 291aa    MW: 32040.4 Da    PI: 4.8511
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.85.7e-196861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  ++e   +t+    ++ +v+r ++fdfl ++v +
  XP_009120643.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITRERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86
                    5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-25372IPR009072Histone-fold
SuperFamilySSF471135.47E-20489IPR009072Histone-fold
PfamPF008081.1E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITRERGAK  60
TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGQGHGT GDVAMDDRTI SKRRKPISDE  120
VNDSDEENKK SKTQEVGNAK PSGRGGRGRG RGRGRGGRAA KAAERENRNR EMDLETAMAE  180
QPPPQDSSQM HVSVSSPQEN EKKDADGGIA ASNEDAKQQL QSPKEGIDFD LNAESLDLNE  240
TKPAPVAAAD AATTSDEYPG WPMELGKIDP TQLASLGKRI DEDEEDYDEE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146155RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530670.0AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120643.10.0PREDICTED: dr1-associated corepressor
TrEMBLM4FCA80.0M4FCA8_BRARP; Uncharacterized protein
STRINGBra038724.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-137nuclear factor Y, subunit C11