PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120702.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 228aa    MW: 25384.7 Da    PI: 4.4482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19656155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  XP_009120702.1  6 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 56
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.6E-12656IPR001471AP2/ERF domain
CDDcd000188.46E-28666No hitNo description
SMARTSM003801.1E-30770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-29765IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21765IPR016177DNA-binding domain
PROSITE profilePS5103221.773764IPR001471AP2/ERF domain
PRINTSPR003672.9E-9819IPR001471AP2/ERF domain
PRINTSPR003672.9E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEAPLPKYTG VRKRKWGKWV AEIRLPNSRE RIWLGSFDSA EKAARAFDAA LYCLRGPGAR  60
FNFPDNPPEI PGGRSLTPQQ IQVVANRFAC EEPLPPPQQQ QQQEQPPSPH GDRTEEGVGN  120
SARGESSGGS GGPTLGQVGG DSNNHVGNCN SNSNTNSNDT TPYWPFMWEE NLMVPTTSEE  180
LGTYFMDVDS TNLYFPSTQH ELSSDFYYDG ASVVEDDYSH YNINLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-163641072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409775e-84AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898835e-84AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608665e-84AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115775e-84BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122435e-84BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026885e-84CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120702.11e-171PREDICTED: ethylene-responsive transcription factor ERF016-like
RefseqXP_013665886.11e-171ethylene-responsive transcription factor ERF016-like
RefseqXP_013717612.11e-171ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-102ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A3P6DHH71e-169A0A3P6DHH7_BRACM; Uncharacterized protein
TrEMBLM4CDU61e-169M4CDU6_BRARP; Uncharacterized protein
STRINGBra002377.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-78ERF family protein