PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120931.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 251aa    MW: 25862.9 Da    PI: 10.0977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-073659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++Gd+C+F H
  XP_009120931.1 36 KSKPCTKFFSTSGCPFGDNCHFLH 59
                    7789******************** PP
2zf-CCCH33.47.8e-11217242127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +fa+ G C +GdrC+FaHg+
  XP_009120931.1 217 FKTKMCERFAK-GNCTFGDRCHFAHGE 242
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0683461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-83659IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-53659IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-15103184IPR004088K Homology domain, type 1
SMARTSM003224.2E-11113183IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-15113182IPR004088K Homology domain, type 1
PROSITE profilePS5008414.32114178IPR004088K Homology domain, type 1
PfamPF000131.7E-11116180IPR004088K Homology domain, type 1
CDDcd001052.90E-13116178No hitNo description
Gene3DG3DSA:4.10.1000.106.6E-16211246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8216246IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7216242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765216243IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7217242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDTRKRAGSF NSNGGGGGFK KSKQEMESYS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY  60
VPGGYNAVAQ LTNMALPMPQ ASRNMQGPGG GGGGRFSGRG GESGPGHVSS FGASATAKIS  120
VDASLAGAII GKGGVSSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASVMVRE  180
LIGRLNSAAS RRPPGGGGGG IGGGVGSEGK PHPGSNFKTK MCERFAKGNC TFGDRCHFAH  240
GEAELRRSGV A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.84010.0bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120938.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C31e-138C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A398ASP01e-179A0A398ASP0_BRACM; Uncharacterized protein
STRINGXP_006407365.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-119C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]