PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009120996.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 390aa MW: 44073.2 Da PI: 6.2848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009120996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.7e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG ekAtPkti+++m+++gLtl+h+kSHLQkYRl XP_009120996.1 45 KPRLKWTPDLHERFVEAVNQLGGGEKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.727	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-20	146	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MYYHNQHQGK SLLSSSRMPI PSERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV 120 EENTPEADES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLERHLQ LRIEAQGKYL 180 QAILEKAQET LGRQNLGPAG IEATKAQLSE LVSKVSSEYP DASFLELQNL HHQQMQTAYP 240 PQNSSLESCL TSSEGNQKAP KMLENRLGLR TYLGDSSSEQ KEIMEEPFFH RMELTWAEEE 300 EEEGIRENNR PYLSAMEPRN SSSRRSPGRL SIGVGLQEHR GGYTEERYRE NGEDCKVETR 360 TSTALDLNTH DETYGTTRPK QFDLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MYYHNQHQGK SLLSSSRMPI PSERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENTPEADES HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLERHLQ LRIEAQGKYL  180
QAILEKAQET LGRQNLGPAG IEATKAQLSE LVSKVSSEYP DASFLELQNL HHQQMQTAYP  240
PQNSSLESCL TSSEGNQKAP KMLENRLGLR TYLGDSSSEQ KEIMEEPFFH RMELTWAEEE  300
EEEGIRENNR PYLSAMEPRN SSSRRSPGRL SIGVGLQEHR GGYTEERYRE NGEDCKVETR  360
TSTALDLNTH DETYGTTRPK QFDLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009120996.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY042878	0.0	AY042878.1 Arabidopsis thaliana transfactor-like protein (MRG7.19) mRNA, complete cds.
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120996.1	0.0	PREDICTED: myb-related protein 1 isoform X2
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A078HMA6	0.0	A0A078HMA6_BRANA; BnaA10g16590D protein
TrEMBL	M4CD64	0.0	M4CD64_BRARP; Uncharacterized protein
STRING	Bra002145.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.5	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]