PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121152.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 253aa    MW: 27545.8 Da    PI: 9.2025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126283223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cgk F ++  L+ H+r+H
  XP_009121152.1 62 PCKVCGKKFWSSKALHGHMRSH 83
                    5********************9 PP
2zf-C2H213.80.00017130150121
                     EEETTTTEEESSHHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                     ++C+ C+k+F ++  L  Hi 
  XP_009121152.1 130 FECEGCKKVFESRQALDGHIC 150
                     89***************9996 PP
3zf-C2H216.72e-05187209123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k Fs+   L  H+r+H
  XP_009121152.1 187 HRCDICSKAFSSGQALGGHMRRH 209
                     79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8896188IPR007087Zinc finger, C2H2
SMARTSM003550.0396183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.91E-56286No hitNo description
PfamPF139121.7E-56385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-56383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.9E-4129148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-7130152No hitNo description
SMARTSM0035586130150IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.48E-7182209No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4186209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887187216IPR007087Zinc finger, C2H2
PfamPF139129.9E-12187210IPR007087Zinc finger, C2H2
SMARTSM003550.0066187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNNNLDLDLN LNPPSSPSNV TPSSHNQAPR RKRTRRTSNN EATSSSSSRR KPDPNAPLIT  60
EPCKVCGKKF WSSKALHGHM RSHPERQWRG INPPPNHQPT APPVSVTAEE GQVLANASTT  120
GSSVGVGGRF ECEGCKKVFE SRQALDGHIC SAILNLNVDP PPPSAPQEIV DEDDKSKSVM  180
VVSEMNHRCD ICSKAFSSGQ ALGGHMRRHW HKDRKEKKQA STGIDLNVPA STNLPGSSSD  240
TLPESSLDLR LRL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121152.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121152.10.0PREDICTED: zinc finger protein ZAT2
RefseqXP_013724919.10.0zinc finger protein ZAT2-like
SwissprotQ9SIJ01e-67ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLA0A397YPB20.0A0A397YPB2_BRACM; Uncharacterized protein
STRINGBra002027.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-57C2H2-like zinc finger protein