PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121402.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 499aa MW: 57392.9 Da PI: 5.6073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.2e-53	6	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++++++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_009121402.1 6 LPPGFRFHPTDEELITYYLKRKINSREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999*********************************** PP NAM 94 skkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +++++g+kktLv+y +grap+g +t Wvmheyrl XP_009121402.1 100 L-RDRAIGTKKTLVYYlyyRGRAPHGIRTGWVMHEYRL 136 .8899******99999**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-61	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.531	6	160	IPR003441	NAC domain
Pfam	PF02365	7.9E-29	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKINS REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYLYYRGR 120 APHGIRTGWV MHEYRLDETE CEPTAFGMQD AYALCRVFKK IIIEGKPRDQ HQQHHQPYAH 180 TSSNISRSSS FDVGSDLEIS SNTHQVLPYN TCANTQPIFG NAFGDHDDRS QYLSQNMAPS 240 FSNYESPYGP YLNQSKVYTE TECGMLQHQM SMPPLQVENT PVPTSIFSNG MNQNSGQCGF 300 DDFTFATSNR NQLYNSNGDD HLIHIGNLEE QLLSAGHSTW MNMSNGSLNQ SFAEDVEVLP 360 SFEENDQDIE YFGRSETSTL NNIEIDEFFS FEDRVEDTDK SNITLNSSGS GMVEEENIVD 420 RKMLICTRQT TQVLYHQVVP SQVLKVRINL VGGNEDRRLF TEEEGKDSWF RKAENVAKMK 480 LKQISLVAKH YYQSFPIIF

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKINS REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYLYYRGR  120
APHGIRTGWV MHEYRLDETE CEPTAFGMQD AYALCRVFKK IIIEGKPRDQ HQQHHQPYAH  180
TSSNISRSSS FDVGSDLEIS SNTHQVLPYN TCANTQPIFG NAFGDHDDRS QYLSQNMAPS  240
FSNYESPYGP YLNQSKVYTE TECGMLQHQM SMPPLQVENT PVPTSIFSNG MNQNSGQCGF  300
DDFTFATSNR NQLYNSNGDD HLIHIGNLEE QLLSAGHSTW MNMSNGSLNQ SFAEDVEVLP  360
SFEENDQDIE YFGRSETSTL NNIEIDEFFS FEDRVEDTDK SNITLNSSGS GMVEEENIVD  420
RKMLICTRQT TQVLYHQVVP SQVLKVRINL VGGNEDRRLF TEEEGKDSWF RKAENVAKMK  480
LKQISLVAKH YYQSFPIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	1	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	1	160	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-52	1	160	15	168	NAC domain-containing protein 19
3swm_B	3e-52	1	160	15	168	NAC domain-containing protein 19
3swm_C	3e-52	1	160	15	168	NAC domain-containing protein 19
3swm_D	3e-52	1	160	15	168	NAC domain-containing protein 19
3swp_A	3e-52	1	160	15	168	NAC domain-containing protein 19
3swp_B	3e-52	1	160	15	168	NAC domain-containing protein 19
3swp_C	3e-52	1	160	15	168	NAC domain-containing protein 19
3swp_D	3e-52	1	160	15	168	NAC domain-containing protein 19
4dul_A	3e-52	1	160	12	165	NAC domain-containing protein 19
4dul_B	3e-52	1	160	12	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121402.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121402.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D3EEU3	0.0	A0A0D3EEU3_BRAOL; Uncharacterized protein
STRING	Bo9g161440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]