PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121834.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 283aa    MW: 30732.7 Da    PI: 6.7078
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.42.8e-29181235258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +p+YVNaKQy++Il+RR++Rak+e e+k+   +rkpylheSRhkhA+rR+R+sgGrF
  XP_009121834.1 181 QPVYVNAKQYEGILRRRKARAKAELERKV--INRKPYLHESRHKHAMRRARASGGRF 235
                     8***************************9..89***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-30178238IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.053179238IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.3E-26181235IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23182204IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860184204IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23212235IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQSKSGRGNE EEANHHHADQ QQQQPIMYPE PWWKTNAFGV IPQERPSSGI PSNSSSLDCP  60
NGSESNDVHS ASEDGGGAGN GENDAAWKDS QAVTSSPSVD QHGMEGSDPA HVAASMHGMH  120
NQQPVQPPEL VGHYMACVPP NPYQDPYYAG MMGAYGHQPL GFRPYLGMPR ERTALPLDIT  180
QPVYVNAKQY EGILRRRKAR AKAELERKVI NRKPYLHESR HKHAMRRARA SGGRFAKKTE  240
AEAAAEDAAA AGREREKGSA TNSSGSEPVE TDSNETLNSS GAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-15179235158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228RHKHAMRRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.74570.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121834.10.0PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ9LXV51e-156NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLM4CXD10.0M4CXD1_BRARP; Uncharacterized protein
STRINGBra008878.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-111nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]