PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122158.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 249aa    MW: 28769.5 Da    PI: 7.5557
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.3e-1432113286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++ + +L++a   +  rl+ g+l++++W++v++++   +  g  ++ +qCk++++ l+k+yk++k+  +       s +++fd+l+
  XP_009122158.1  32 WTEDATATLLQAWGHRYVRLNFGNLRQNDWKQVADAVnssHGNGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 113
                     *************************************9666667788********************99986......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2430114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METTTPPPPP AKPWQPHSTV SHRQPSGRED WWTEDATATL LQAWGHRYVR LNFGNLRQND  60
WKQVADAVNS SHGNGRPKTD TQCKSRIDTL KKKYKAEKAK LSPSAWRFFD RLDVLIGPVS  120
KKPAEEVVKL ETSEPYLSLT GNKHRESSLE DDDEDEAGDW GFVSRKYPRL EEGDLSEESA  180
CKELARTIVK LGEVYERVEC RKQKMMIELE KQRMEVVKEL ELKRINMLME MQLELEKSKN  240
RKREGGSGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122158.20.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM4CY221e-180M4CY22_BRARP; Uncharacterized protein
STRINGBra009119.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-102sequence-specific DNA binding transcription factors