PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009122294.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 215aa MW: 24931.3 Da PI: 6.9004

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009122294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	76.9	2.7e-24	77	144	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGse............kAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++Wt++LH++Fve+v++LGG+ +AtPk+il++m + Lt+++vkSHLQkYR++ XP_009122294.1 77 KTRIKWTTDLHDKFVECVNHLGGPMityyfqliikllEATPKQILKMMRTDELTIYKVKSHLQKYRTH 144 68*******************854444444554557**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-12	76	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-23	77	144	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	81	142	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.3E-11	114	145	IPR006447	Myb domain, plants
Pfam	PF14379	5.8E-8	168	212	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKFGRRHASD NDPSHEMCSE QATHCCKCYD ISEIFSTETR QTTSLSKQSS ECVETDISTE 60 PAGSSLASEF TSSSPIKTRI KWTTDLHDKF VECVNHLGGP MITYYFQLII KLLEATPKQI 120 LKMMRTDELT IYKVKSHLQK YRTHKHVQNS MQGTSLKEEE IHLEGSGIKE FMRLQDKVGQ 180 HLQEQLEIQR ELYLVVEEQN KKLHEMITFQ KQNNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	77	146	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009122294.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511282.1	1e-146	PREDICTED: myb family transcription factor PHL5-like isoform X2
TrEMBL	A0A397XQ85	1e-141	A0A397XQ85_BRACM; Uncharacterized protein
STRING	Bra009230.1-P	4e-81	(Brassica rapa)
STRING	Bostr.10199s0037.1.p	3e-85	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19527	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-33	G2-like family protein