PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122295.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 204aa    MW: 23548.6 Da    PI: 7.0929
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.6e-3178133156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++Wt++LH++Fve+v++LGG+ kAtPk+il++m  + Lt+++vkSHLQkYR++
  XP_009122295.1  78 KTRIKWTTDLHDKFVECVNHLGGPMKATPKQILKMMRTDELTIYKVKSHLQKYRTH 133
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.95175135IPR017930Myb domain
SuperFamilySSF466898.06E-1577133IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-2478134IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-2678133IPR009057Homeodomain-like
PfamPF002498.7E-882131IPR001005SANT/Myb domain
PfamPF143795.3E-8157201IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKFGRRHASD NDPSHEMCSE QATHCCKCYD ISEIFSTETR QTTSLSKQSS ECVETDISTQ  60
EPAGSSLASE FTSSSPIKTR IKWTTDLHDK FVECVNHLGG PMKATPKQIL KMMRTDELTI  120
YKVKSHLQKY RTHKHVQNSM QGTSLKEEEI HLEGSGIKEF MRLQDKVGQH LQEQLEIQRE  180
LYLVVEEQNK KLHEMITFQK QNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1878135259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122295.11e-152PREDICTED: myb family transcription factor PHL5-like isoform X1
SwissprotQ0WVU38e-35PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A397XQ851e-147A0A397XQ85_BRACM; Uncharacterized protein
STRINGBostr.10199s0037.1.p5e-88(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-37G2-like family protein