PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122325.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 291aa    MW: 33211 Da    PI: 7.8346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-16194244255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  XP_009122325.1 194 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESNVDAARAYDCAAFKLRG 244
                     7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-30193253IPR001471AP2/ERF domain
PfamPF008476.3E-11194244IPR001471AP2/ERF domain
SMARTSM003801.0E-35194258IPR001471AP2/ERF domain
PROSITE profilePS5103224.395194252IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22194253IPR016177DNA-binding domain
CDDcd000184.42E-30194252No hitNo description
PRINTSPR003676.5E-13195206IPR001471AP2/ERF domain
PRINTSPR003676.5E-13234254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
VLIVKNYYTS IKPLRERQNH KXFVSLHHPW LLKLCDYLLV SSSLPFIYRK QNIXSFCSNI  60
ICRLCLSFFP LSPALSRRKK MAAFEESSDL DAIQEHLLED FLVADGFMGD FDFNASFVSG  120
LWCIEPVMNQ VPKQEPDSPV LDPDSFVKEF LQVEVESSTS TGVSEQNSSP HETDQSVSPR  180
KEAKRLEEEE EPRHYRGVRR RPWGKFAAEI RDPAKKGSRI WLGTFESNVD AARAYDCAAF  240
KLRGRKAVLN FPLDAGKYEA PVNSGRKRKR SDVQEELQRS QSNSSSSSSD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28193253161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-28193253464ATERF1
3gcc_A4e-28193253464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122325.21e-153PREDICTED: ethylene-responsive transcription factor ERF106
RefseqXP_013715722.11e-153ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-109EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078JG721e-151A0A078JG72_BRANA; BnaA10g30200D protein
TrEMBLA0A397XQ611e-151A0A397XQ61_BRACM; Uncharacterized protein
TrEMBLM4CYF31e-151M4CYF3_BRARP; Uncharacterized protein
STRINGBra009250.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-131ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]