PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122368.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 147aa    MW: 17096.7 Da    PI: 9.4759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-0952108563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     k+ +r  +NR+AA++sR +K+++i+ L +k+  L   +  L++++e+ +++ + l+ e+
  XP_009122368.1  52 KKLKRIVSNRVAAQKSRWKKLQYIDDLVKKSRDLNVSM--LRSQVEMASEQKQCLEREK 108
                     8999********************************99..9****99999988777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.4E-844112No hitNo description
SMARTSM003381.6E-548110IPR004827Basic-leucine zipper domain
PfamPF001704.1E-752108IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-852111No hitNo description
CDDcd147031.18E-953102No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSDPSFPVPT SFQVSNDGSQ VEEKKTGYLN YEVEPGFTIR LRQNIDPAMD PKKLKRIVSN  60
RVAAQKSRWK KLQYIDDLVK KSRDLNVSML RSQVEMASEQ KQCLEREKME LKECMAGWIQ  120
RFISDQGEIE ANTAEIERLK KKMAHMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122368.11e-106PREDICTED: basic leucine zipper 19 isoform X2
TrEMBLM4CYJ11e-105M4CYJ1_BRARP; Uncharacterized protein
STRINGBra009288.1-P1e-106(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.15e-58bZIP family protein