PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122430.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 166aa    MW: 18485.7 Da    PI: 4.2836
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB796.4e-251199391
           NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                    ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al  lGf +yve++ +  +++r
  XP_009122430.1 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHR 99
                    6899***************************************************************************9976554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-408139IPR009072Histone-fold
SuperFamilySSF471131.53E-3512140IPR009072Histone-fold
PfamPF008087.7E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHRY ETMQDSQRSV KMNSGAEMTE  120
EEAAAEQQRM FAEARARMNG GGGGVSVPQP DPEQQVDTQQ QSNLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B9e-351213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.177710.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284001e-133AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
GenBankAK2271641e-133AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07.
GenBankAY0870171e-133AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence.
GenBankAY1255441e-133AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122430.11e-121PREDICTED: protein Dr1 homolog
RefseqXP_013715273.11e-121protein Dr1 homolog
RefseqXP_022549450.11e-121protein Dr1 homolog
SwissprotP495921e-100NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A397XN501e-119A0A397XN50_BRACM; Uncharacterized protein
TrEMBLM4CYN11e-119M4CYN1_BRARP; Uncharacterized protein
STRINGBra009328.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08190.12e-73nuclear factor Y, subunit B12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]