PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122602.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 345aa    MW: 37692.3 Da    PI: 8.4719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009122602.1 136 YQCKTCDRTFPSFQALGGHRASH 158
                     9***********99999998887 PP
2zf-C2H212.50.00044212234123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F++   L  H+r+H
  XP_009122602.1 212 HECGVCGAEFTSGQALGGHMRRH 234
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-8135158No hitNo description
PfamPF139122.0E-12135160IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471136163IPR007087Zinc finger, C2H2
SMARTSM003550.028136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-8207234No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4210236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11211236IPR007087Zinc finger, C2H2
SMARTSM003550.054212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951212236IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEAFVEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIAPPI VSSHARDILE ESKKDGVITS  60
SSSSASWFSN NNATLKAEED EEEQDIANCL ILLSQGHSLP IPNHEANNNN TFRFSSRRFL  120
ETSSSNGGGK AGYYVYQCKT CDRTFPSFQA LGGHRASHKK PKATLSLYSN IDVKKNIYES  180
DAVSLVTTST IYKNNNNRSL AVYGKAGSNK VHECGVCGAE FTSGQALGGH MRRHRGAVVI  240
AAAPVTTVTV ATAAANTELS LSSMSFDQIS DGQDHLVMPA TKRAKKTVVS LDLDLNLPAS  300
EDENRVNGFT FALKQKQEQE HQPTMQREEP KCLLMSAPTL VDCRY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122602.10.0PREDICTED: zinc finger protein ZAT5
RefseqXP_013732898.20.0zinc finger protein ZAT5-like
TrEMBLA0A397XQQ50.0A0A397XQQ5_BRACM; Uncharacterized protein
TrEMBLM4CZ100.0M4CZ10_BRARP; Uncharacterized protein
STRINGBra009457.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-163C2H2 family protein