PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122638.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 325aa    MW: 35142.1 Da    PI: 7.0431
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.9e-30100153155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_009122638.1 100 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 153
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-2097157IPR009057Homeodomain-like
PROSITE profilePS5129411.05997156IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-3099158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24101153IPR006447Myb domain, plants
PfamPF002491.3E-7103152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MREDDTDWFT RWEEELPSPE ELIPLSQSLI SPDLALAFDI RLPNNSGQPH HHHHHHQSTP  60
PPQLPSSQAN SSAEFAADSA DLGSGATAGA GDEPARTLKR PRLVWTPQLH KRFVDAVAHL  120
GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG LSSGGGGGSD PATDRLFASS  180
PVPAHFLHPN RVPSSDHFMP SFVPIATLQQ QQQMAAVAAA AAAAASAHLQ PPQFHHRQIS  240
AAHYGSPTAN GQFGSPPATG QFGSPPANGK FDQSFLARQT QQQQTLQRMS TPSLHSPVGN  300
YIEDLESANA NGGRTVLTLF PTRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32100156157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.149741e-133flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122638.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122638.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222102e-67MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A3P5ZCP80.0A0A3P5ZCP8_BRACM; Uncharacterized protein
TrEMBLM4EZA10.0M4EZA1_BRARP; Uncharacterized protein
STRINGBra034144.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-143G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]