PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122694.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 265aa    MW: 28830.4 Da    PI: 7.6286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+  Fs+   L  H+r+H
  XP_009122694.1 181 HECSICKAEFSSGQALGGHMRRH 203
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-12110135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-9110133No hitNo description
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
SMARTSM003550.049111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-9176203No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4178205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12180205IPR007087Zinc finger, C2H2
SMARTSM003550.031181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307181205IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTSVHEEMRH VLLIKGKRTK RQRSASPHMN AEAVSGVCSE EPSLEAREEG AGEVEFQGAT  60
EEDQDMANCL MLLSQGHKAN GSGDHSSTHK LDFLCNKKPV ASLGLGLEGV YQCQTCDKSF  120
HSFQALGGHR ASHKKPKLGA IVLKCHEKKS SSASAVETAK GSFLSLQVTS SDGNKKPEKT  180
HECSICKAEF SSGQALGGHM RRHRGLIVNA NATSSHHQES IRPKNYLELD LNLPAPEDES  240
KFVFASKDQI ILFTTASNSL IDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122694.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A3P6D5A10.0A0A3P6D5A1_BRACM; Uncharacterized protein
TrEMBLM4CZ780.0M4CZ78_BRARP; Uncharacterized protein
STRINGBra009525.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-144C2H2 family protein