PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122937.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 691aa    MW: 78917.2 Da    PI: 7.6964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.8e-08634687347
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                       WT+eE+e l+ +v+ + ++     +Wk+I ++      ++R + ++k++w+ +
   XP_009122937.1 634 LWTPEEEEMLKVGVETFATDpkkniSWKRILKMGEnvfhQTRNPADLKDKWRRH 687
                      6******************************9888****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.850.105.5E-1073321IPR001752Kinesin motor domain
SMARTSM001291.8E-1363320IPR001752Kinesin motor domain
PROSITE profilePS5006798.465312IPR001752Kinesin motor domain
SuperFamilySSF525401.06E-1025342IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF002254.4E-9515310IPR001752Kinesin motor domain
PRINTSPR003801.8E-407394IPR001752Kinesin motor domain
PRINTSPR003801.8E-40176193IPR001752Kinesin motor domain
PROSITE patternPS004110208219IPR019821Kinesin motor domain, conserved site
PRINTSPR003801.8E-40209227IPR001752Kinesin motor domain
PRINTSPR003801.8E-40262283IPR001752Kinesin motor domain
Gene3DG3DSA:1.10.10.607.2E-8627687IPR009057Homeodomain-like
PROSITE profilePS500907.329627688IPR017877Myb-like domain
SuperFamilySSF466896.8E-9629688IPR009057Homeodomain-like
SMARTSM007172.8E-5631690IPR001005SANT/Myb domain
PfamPF002499.2E-6634687IPR001005SANT/Myb domain
CDDcd116602.67E-7635685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MERSRIHVAI RCRPISKKET KKSPWRVSSD SISVRNPSSS LSFQFDRMFK EDCETIQVYE  60
ARTKEIVAAA VRGFNGTVFA YGQTNSGKTH TMRGSPAEPG VIPLSVSDLF EITQQDTSRE  120
FLLRMSYLEI YNEDIIDLLA PEHHRKLQIH ENLEGAANTD LLMVFHFSAH RHIGATNMNV  180
HSSRSHTIFR MVIESSQKTQ DDDAVRVSVL NLVDLAGSER ASKTGAEGVR LKEGSHINKS  240
LMTLGTVIKK LSEGVDNQGG HIPYRDSKLT RILQPALGGN ANTAIICNIT LAQNHADETK  300
SSLKFASRAL RVTNCAHVNE ISSDVALLKR KKKEIDELRS KPKTSHSDHS DEENLNLRNT  360
LLKSELERER IAMELDEEKK AQAQREKVLQ EQAKKIENLS SIVLFSNRDE KREQEDRFKK  420
GKRRDTWGTG LLSRDSSTSE VQSHGLSRER FERETGPLLP FAELVKSERL CSISEQDENS  480
IDEDSALPDP CALVHVTRRK KPSSIRQKKP VMVESESDII LRECEHLFLQ YETEIITNQI  540
QIECLKARVF GNVPRDESSV HLRDPEDIRL IKQLQEKINM LETEKSSSKQ NLDDLVTVAT  600
EQNTCARQKI AEMLSDESEK LDLTFFNQRQ RRVLWTPEEE EMLKVGVETF ATDPKKNISW  660
KRILKMGENV FHQTRNPADL KDKWRRHNPS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1t5c_A3e-8823242340Centromeric protein E
1t5c_B3e-8823242340Centromeric protein E
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122937.10.0PREDICTED: kinesin-like protein KIN-7O
SwissprotF4J2K40.0KN7O_ARATH; Kinesin-like protein KIN-7O
TrEMBLM4CZE40.0M4CZE4_BRARP; Kinesin-like protein
STRINGBra009591.1-P0.0(Brassica rapa)
Publications ? help Back to Top
  1. Reddy AS,Day IS
    Kinesins in the Arabidopsis genome: a comparative analysis among eukaryotes.
    BMC Genomics, 2001. 2: p. 2
    [PMID:11472632]
  2. Rose A, et al.
    Genome-wide identification of Arabidopsis coiled-coil proteins and establishment of the ARABI-COIL database.
    Plant Physiol., 2004. 134(3): p. 927-39
    [PMID:15020757]
  3. Richardson DN,Simmons MP,Reddy AS
    Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes.
    BMC Genomics, 2006. 7: p. 18
    [PMID:16448571]
  4. Zhu C,Dixit R
    Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins.
    Protoplasma, 2012. 249(4): p. 887-99
    [PMID:22038119]