PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123119.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 301aa    MW: 34728.1 Da    PI: 6.3266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15112163155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  XP_009123119.1 112 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 163
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.56E-12110167No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPLGAVVYPQ DTSGYLSNCK DFMFYDLSYR EEVVAQDTKN NIDTLGQEQS FVEKNEEERQ  60
WRDYHHKYPL IPLLDEKLDL PATDMEKHPP IQPRRKRRRT RSNKNKEEIE NQRMTHIAVE  120
RNRRKQMNEY LAVLRSLMPS SYAQRGDQAS IVGGAINYVK ELEHILQSME PRRTTTTTHE  180
VDTSTSSLMS PFSEFFTYPQ YSTKSSSSAT ENSSSPAEIE VTVAEGHANI KIMSKKKPRQ  240
LLKLVDSIQS LRLTLLHLNV TTLDDSILYS ISVKVEEESQ LNTVDDIATA LNQIIRRIQE  300
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRRR
29499RKRRRT
3112123RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123119.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-159BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A078G4I10.0A0A078G4I1_BRANA; BnaA09g30620D protein
TrEMBLA0A397XZ610.0A0A397XZ61_BRACM; Uncharacterized protein
STRINGBo5g038570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-151bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]