PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123488.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 185aa    MW: 21724.4 Da    PI: 6.3692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09152181130
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                     +r +h  +Er+RR+++N+  + Lr+llP++
  XP_009123488.1 152 QRISHIVVERNRRRQMNEHVNSLRSLLPPS 181
                     699*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.58E-8142182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-6150185No hitNo description
Gene3DG3DSA:4.10.280.101.9E-7150182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.573151185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6152181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESFQGHINP CYLDRKADAR SLEVQEFAEA QSFSFKEEED QDTVPFLQML QSEEPSFLRL  60
LSLQNLKEPW EVESFLSQEG YPHLYQNQVS ASYMEGAKQD LSSQEADMIL LPSSSPQHKR  120
KNSDLLAPDM TREKRKRRKT KPSKNIEEIE SQRISHIVVE RNRRRQMNEH VNSLRSLLPP  180
SYIQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118138KRKNSDLLAPDMTREKRKRRK
2133138KRKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123488.11e-134PREDICTED: transcription factor bHLH67-like, partial
SwissprotQ700E43e-64BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078JLU31e-130A0A078JLU3_BRANA; BnaA04g27520D protein
STRINGXP_006402426.11e-68(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.13e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]