PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123499.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 161aa MW: 18028.2 Da PI: 6.3551

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.9	2.3e-12	12	49	2	38
---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 ie k+ ++v f+kRrng++ KA EL+ L a++a++ XP_009123499.1 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSAQIAIL 49 79***************************725788876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-9	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.199	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-14	5	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-11	13	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA 60 FYSFGHSSVD HVVSSLLNDR CPLPTEQENN SRLGFWWEDE GFNRSENIDE LKEATDAVSR 120 MLNNLRLRLD ALKSNQSGGA LVIHQEEVLH ICDTETNNNE E

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123499.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123497.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_009123499.1	1e-117	PREDICTED: agamous-like MADS-box protein AGL97, partial
Swissprot	Q9C633	2e-42	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	A0A078IXB9	1e-115	A0A078IXB9_BRANA; BnaA09g53170D protein
TrEMBL	M4FIN6	1e-115	M4FIN6_BRARP; Uncharacterized protein
STRING	Bra040965.1-P	1e-116	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	8e-64	AGAMOUS-like 55

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]