PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123533.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 342aa MW: 36472 Da PI: 10.1604

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.2e-08	313	334	5	26
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r+rr++kNRe+A rsR+RK+ XP_009123533.1 313 RRQRRMIKNRESAARSRARKQN 334 79******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14707	3.18E-13	313	333	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-5	313	335	No hit	No description
PROSITE pattern	PS00036	0	316	331	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLSAFIKNLL ESLGSRSNMN FKNNNNMGNE PPGDGGGGAL TRQGSIYSLT FDEFQSSLGK 60 DFGSMNMDEL LKNIWTAEET QAMAVAASTS GVIPLAGEGL PLQRQGSLTL PRTLSTKTVD 120 QVWKDLAKDG GGGTNLTQSQ SQRQQTLGEV TLEEFLVRAG VVREEAQIAA KDANTGFSVQ 180 ASPQVVPGLM GNLGAETVNH MQVQGSSLPL NVNGARSTYQ QHQPIMPKQP GFGYGTHVGP 240 GIRGGLMGLG DQSLTNNMGL VQGVVGAVSP VTPVSADGIG KNNGDSSSLS PSPYMFNGVR 300 GRKSGTVEKV VERRQRRMIK NRESAARSRA RKQNHWDLKE TR

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLSAFIKNLL ESLGSRSNMN FKNNNNMGNE PPGDGGGGAL TRQGSIYSLT FDEFQSSLGK  60
DFGSMNMDEL LKNIWTAEET QAMAVAASTS GVIPLAGEGL PLQRQGSLTL PRTLSTKTVD  120
QVWKDLAKDG GGGTNLTQSQ SQRQQTLGEV TLEEFLVRAG VVREEAQIAA KDANTGFSVQ  180
ASPQVVPGLM GNLGAETVNH MQVQGSSLPL NVNGARSTYQ QHQPIMPKQP GFGYGTHVGP  240
GIRGGLMGLG DQSLTNNMGL VQGVVGAVSP VTPVSADGIG KNNGDSSSLS PSPYMFNGVR  300
GRKSGTVEKV VERRQRRMIK NRESAARSRA RKQNHWDLKE TR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123533.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE616526	0.0	HE616526.1 Brassica napus abf2 gene for abscisic acid responsive elements-binding factor 2, exons 1-4.
GenBank	HE616527	0.0	HE616527.1 Brassica napus mRNA for abscisic acid responsive elements-binding factor 2 (abf2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511404.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
Swissprot	Q9M7Q4	1e-151	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A3P6CUG3	0.0	A0A3P6CUG3_BRACM; Uncharacterized protein
STRING	Bra040260.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-139	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]