PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123549.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 503aa    MW: 53977.4 Da    PI: 7.365
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1485123241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  XP_009123549.1  85 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCFNNVD 123
                     689*************************.********986 PP
2TCR51.32.3e-16169208140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  XP_009123549.1 169 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 208
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-1584124IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.6185209IPR005172CRC domain
PfamPF036388.5E-1186121IPR005172CRC domain
SMARTSM011147.8E-20169210IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-13172207IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP PLQSPQVPIR  60
LPKPESPKPK PRPVVVEAGD GTPMKKKHCN CKHSRCLKLY CECFASGTYC DGCNCLNCFN  120
NVDNEPARRE AIESTLERNP NAFRPKIASS PHDPRDNREV VGGVVMLGKH HKGCHCKKSG  180
CLKKYCECFQ ANILCSDNCR CLGCKNFEGS EDRLALFHGE HSHGAAYLQH ANAAITGAVG  240
SSGFASSPAP KRRKSQDIFF NQAAKDSSIN RLGQGSSGKT TSSKPVARHG GPSKVVYRSL  300
LADIIQPQDV KALCSVLVAV SEEAAKTSTV KRLEDQTETS LASSAQDNNN GTEIEKAASG  360
NEAGADESNS DGSKGKSLSP ETLALMCDEQ DTMLMVAASS NYSVEPPNGQ DQGYAEKEKI  420
VLTKFRDCLN RIISYAELKE SKCSLSRMDT ESPVHAAVKT EPVVQQGEVA NGVSQTTIQQ  480
PSQLTSSYTQ TQQPQAPSEK KDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-308621811132Protein lin-54 homolog
5fd3_B4e-308621811132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.117930.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511406.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLM4FIW30.0M4FIW3_BRARP; Uncharacterized protein
STRINGBra041042.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein