PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123613.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 423aa MW: 47142.4 Da PI: 6.45

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.2	3.6e-13	4	46	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 p lrWt++LH++Fv+a+e G e+AtPk++lel+k Ltl hv XP_009123613.1 4 PWLRWTTTLHACFVHAIELFGVLERATPKSVLELVK--YLTLVHV 46 569******************************965..5777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.58E-5	3	46	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-10	4	46	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-9	6	46	IPR006447	Myb domain, plants
Pfam	PF14365	4.7E-23	62	158	IPR025521	Domain of unknown function DUF4409
Pfam	PF03080	2.2E-78	172	396	IPR004314	Domain of unknown function DUF239

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTAPWLRWTT TLHACFVHAI ELFGVLERAT PKSVLELVKY LTLVHVLMSI CVTVAMSTPV 60 LTINSPDGDL IDCMKINDQQ ALQHPLLKHH KIQETPTGHM VQKGENSGWQ VWHRSGACPR 120 GSIPVRRSED TIFQKNETVT PNAAADRATR GHQYAIAYVK GKRKIYGTKA TINVWDPIVE 180 ASGDFSLAQI WVASGSYETN DLNTIEAGWQ VFPSKYGDAQ PRVFTYWTSD TYYSGCYSLR 240 CPGFLQTSSR IALEAAISHM STYGGDQFAI TIQIWKDPIS GNWWLAIGVD TFEPVGYWPA 300 ELFTTMSDHA TMVEWGGEIL YRNTSGLSTI TQMGSGEFPE KGYRKSAYFC NLNVAEEHNS 360 LQPVEDFNLQ ADHEELYTIM KSNTEACGNH FYFGGPGHGP VRSTAVRAAA TFVFLFSAVL 420 LVL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTAPWLRWTT TLHACFVHAI ELFGVLERAT PKSVLELVKY LTLVHVLMSI CVTVAMSTPV  60
LTINSPDGDL IDCMKINDQQ ALQHPLLKHH KIQETPTGHM VQKGENSGWQ VWHRSGACPR  120
GSIPVRRSED TIFQKNETVT PNAAADRATR GHQYAIAYVK GKRKIYGTKA TINVWDPIVE  180
ASGDFSLAQI WVASGSYETN DLNTIEAGWQ VFPSKYGDAQ PRVFTYWTSD TYYSGCYSLR  240
CPGFLQTSSR IALEAAISHM STYGGDQFAI TIQIWKDPIS GNWWLAIGVD TFEPVGYWPA  300
ELFTTMSDHA TMVEWGGEIL YRNTSGLSTI TQMGSGEFPE KGYRKSAYFC NLNVAEEHNS  360
LQPVEDFNLQ ADHEELYTIM KSNTEACGNH FYFGGPGHGP VRSTAVRAAA TFVFLFSAVL  420
LVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123613.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123613.1	0.0	PREDICTED: uncharacterized protein LOC103848466 isoform X1
TrEMBL	D7LYM3	1e-151	D7LYM3_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_6001536	1e-152	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	4e-15	G2-like family protein