PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123727.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 206aa    MW: 23345.2 Da    PI: 4.8859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07549346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT eE e++++av+ +      + ++Ia+ +g  ++  ++k+++q 
   XP_009123727.1  5 SWTNEENEQFKNAVQVFSAFspnRLELIAQFLG--KSVVDVKEHYQE 49
                     7***************98665556777777776..9*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-5253IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-10457IPR009057Homeodomain-like
CDDcd001673.06E-5551No hitNo description
SMARTSM007170.1378126IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-780128IPR009057Homeodomain-like
CDDcd001670.0010682124No hitNo description
Gene3DG3DSA:1.10.10.602.0E-482125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAANSWTNEE NEQFKNAVQV FSAFSPNRLE LIAQFLGKSV VDVKEHYQEM VDDLLEIRSS  60
QLALSNGMFD AVELCQIEKP IWDKEEHEWF LIGLGRFGRN CNKIAVLVVT KTPMQVAIYA  120
QNFFNWHNSQ NNVVKRRRTV DITMGDIRVD STGQQGRTFG GINVGLNWPT RHENLVPLQP  180
QQQQGPVALE TGQDANISDS ESNNLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123727.11e-153PREDICTED: transcription factor DIVARICATA
TrEMBLM4EZ881e-151M4EZ88_BRARP; Uncharacterized protein
STRINGBra034131.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-23MYB family protein