PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123772.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 161aa MW: 17511.7 Da PI: 7.7994

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.1	1.6e-20	2	87	18	98
DUF260 18 lapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 l+p++ +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+++e++l++ XP_009123772.1 2 LRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNWSICQAAVETVLRG 87 5666666664567889***************************************************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.688	1	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-16	12	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
ILRPCIQWIE SAEAQGHATV FVAKFFGRAG LMSFISSVPE SQSPALFQSL LYEACGRTVN 60 PVNGAVGLLW TGNWSICQAA VETVLRGGSL RPMPELLTRD GGFGGFPSTT SDEASEICTE 120 MLNDCGDRSA YHHCRFSSSR TSRPTASPPN RKRLASEQQQ R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.21861	0.0	bud\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123772.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115680.1	1e-116	PREDICTED: LOB domain-containing protein 38-like
Refseq	XP_009123772.1	1e-117	PREDICTED: LOB domain-containing protein 38-like, partial
Swissprot	Q9SN23	4e-91	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A291LR24	1e-115	A0A291LR24_BRARR; Transcription factor LBD38
TrEMBL	A0A397Y814	1e-115	A0A397Y814_BRACM; Uncharacterized protein
TrEMBL	M4F4P0	1e-115	M4F4P0_BRARP; Uncharacterized protein
STRING	Bra036040.1-P	1e-116	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-88	LOB domain-containing protein 38