PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123991.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 399aa    MW: 44462.6 Da    PI: 5.6808
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-32202256155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  XP_009123991.1 202 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 256
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.862199259IPR017930Myb domain
SuperFamilySSF466898.24E-17200256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-30201258IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-23202256IPR006447Myb domain, plants
PfamPF002495.4E-10204255IPR001005SANT/Myb domain
PfamPF143792.3E-22290336IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTLTGDFGFP PTAMSSFFPL IPTTLDERYH HHKFPNSLWV SSSGQEPMNN PVPCQVFPLA  60
SGGTSSGYCN GTYVSAQERS SSQTRQSVET QSLPVTNQPQ EQRDMSWPED QLQGFFDFPP  120
QGESSSRAKS EWPDWANQMI SVDDGLEPNW SELLGDPNVL NQDSKIPTPS CDIARQEIVV  180
STQHQVDSSS AKSPQASSMT SKQRMRWTPE LHEAFVDAIN QLGGSERATP KAVLKLINSP  240
GLTIYHVKSH LQKYRTARYK PEISIDTEKP PLKTLKTIED IKSLDLKTSI EITEALRLQM  300
EVQKKLHEQL EVQRTLQLQI EEQGRYLQMM IEKQQQKMQE KKIGSSSGTS SMPEADTSSA  360
PSPNLSQASV TERLQSGGSS TLDQSGYPSG ATKKRVRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-27202260260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123991.10.0PREDICTED: myb family transcription factor PHL13 isoform X1
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLM4FGG80.0M4FGG8_BRARP; Uncharacterized protein
STRINGBra040196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.11e-168G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]