PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124212.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 425aa    MW: 46796 Da    PI: 4.5749
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.1e-37119218298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     lfqrlw++eDei lL+G++d+ ++++g  s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+
  XP_009124212.1 119 LFQRLWTDEDEIELLRGFLDYvATHRGGnSSHPpDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISR 213
                     79*******************7666776355558************************************************************* PP

          DUF573  94 kiWgs 98 
                     kiW++
  XP_009124212.1 214 KIWNQ 218
                     ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-33120217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTSDQRDVVF SLESPDLEEG AAGDGGESDT DENDDVAIPE TNEEPEDDDP EEEDLTAVTV  60
TVSASSTDAV TVALPAGSAV PVSVIPVDSS DPKWHRVTEI VHHQRPLPPP TPIDDSRRLF  120
QRLWTDEDEI ELLRGFLDYV ATHRGGNSSH PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR  180
LKKKYRNVMS KISSGKEVFF KSPHDQSTFE ISRKIWNQTG KIIGFEDNNA MDFEETNTNG  240
NYFNSPGGLN PSNVEIDSEN GVERRLMMSS SSGGSRKRSR SRIGKIEEDN KPIITPSEGQ  300
TPNAASNVNL NEPATAVVGG NIGVLIEETV KNCVSPVIKE MMNGTTSMMM AAMGGGGNGH  360
GFGSFSPVFT RPLGYGVEGG NKAVSDERWR KQQILELEVY SRRLELVQEQ IRATLHELKT  420
MPSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.109200.0bud| flower| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124212.10.0PREDICTED: probable transcription factor At3g04930
RefseqXP_013750762.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLM4FH380.0M4FH38_BRARP; Uncharacterized protein
STRINGBra040416.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-143DNA-binding storekeeper protein-related transcriptional regulator