PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009124451.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 204aa MW: 23460.9 Da PI: 4.7577

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009124451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94.9	8.1e-30	56	150	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ w+++De+++L ++d++++t+ s +d+dafy +vk+ i++++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+ XP_009124451.1 56 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWDAFYGYVKDFIEADFSKKQLTDKIRNLNKRFLGNKARCSDEEGPSFTDTEDDIIFKLSVIIWD 150 5799******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-23	58	150	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MVLGKRTREH STDSNDKPIS SSPLRRMQLD DVSGVESMLR RRKQPKTTPV SSSSNNKMNW 60 TKDDELIILG SIVDYEKETK LSHRSDWDAF YGYVKDFIEA DFSKKQLTDK IRNLNKRFLG 120 NKARCSDEEG PSFTDTEDDI IFKLSVIIWD STNETECASD ENVDQQAKDV RCVENERVDE 180 NMDQAKDAPS VEHEQVSKNM DQAK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of rosette leaves, in primary and secondary roots and at the base of flowers and siliques. {ECO:0000269\|PubMed:18162594}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009124451.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124451.1	1e-150	PREDICTED: GLABROUS1 enhancer-binding protein-like 3, partial
Swissprot	Q9SJM4	4e-48	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	M4DL63	1e-127	M4DL63_BRARP; Uncharacterized protein
STRING	Bra017244.1-P	1e-128	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-50	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]