PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124559.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 292aa    MW: 32004.3 Da    PI: 9.7996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l  +v ++G+g W+tI +          R+  ++k++w++
   XP_009124559.1  5 KQKWTQEEESALRSGVIKHGPGKWRTILKDPDfsevlFLRSNVDLKDKWRN 55
                     79***********************************55**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.281158IPR017930Myb domain
SuperFamilySSF466896.03E-15271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-13456IPR009057Homeodomain-like
SMARTSM007171.1E-5459IPR001005SANT/Myb domain
PfamPF002491.8E-8555IPR001005SANT/Myb domain
CDDcd116608.76E-18656No hitNo description
SMARTSM005263.6E-13106171IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-14107185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-12107177IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.939108176IPR005818Linker histone H1/H5, domain H15
PfamPF005388.3E-6113169IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGAPKQKWTQ EEESALRSGV IKHGPGKWRT ILKDPDFSEV LFLRSNVDLK DKWRNMSVIA  60
NGWGSREKSR LAVKRTHSLP KQEATSLANT SPLQSDEEMA DATGTSAPNV RLDSLIMEAI  120
STIKEPGGSN KTSIGTYIEE QYHAPPDFKR LLSAKLKYLT ACRKLIKVKR KYRIPNSTPL  180
SSHRKRQLGT SSGKQRSLSS PSPKTDGDEV SVETNAQIDP ELARMKTMNV HEAAAVAAQA  240
VAEAEAAMAA AEEAARDAEL AEAEAEVAQA FAEEALKTLK GKYNNCKVMI RA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.81281e-117flower
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0627362e-84AY062736.1 Arabidopsis thaliana Unknown protein (At1g49950; F2J10.16) mRNA, complete cds.
GenBankAY5195392e-84AY519539.1 Arabidopsis thaliana MYB transcription factor (At1g49950) mRNA, complete cds.
GenBankBT0096772e-84BT009677.1 Arabidopsis thaliana At1g49950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124559.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009124561.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-138TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A397ZAF50.0A0A397ZAF5_BRACM; Uncharacterized protein
STRINGBra039650.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-135telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]