PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009124697.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 555aa MW: 62172.6 Da PI: 5.3344

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009124697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	19	38	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk s ++ L++H++ XP_009124697.1 19 QCKHCGKQMSGWYRLRHHLS 38 8*****************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04937	1.5E-38	109	253	IPR007021	Domain of unknown function DUF659
SuperFamily	SSF53098	5.69E-24	119	523	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	3.0E-5	454	544	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MDIHEHGVLV GKEKRRRIQC KHCGKQMSGW YRLRHHLSGV GGDATPCVQV TSSVREMFRT 60 TTTGPKRGRT GDSEHVWCSY PNCLDFSSNG FREIMMTVSG RTIPDPHGSM FGEVLKEVED 120 HVEKVKDSWG VTGCSILLDA WVDHKGHDLV TFVADSPAGS VYLKSFDVSD IKHDSEALIS 180 IVDGLVDEVG VSNVVQIVAC SASGWVGELG EAYVGTKKGV FWSVSVSHCF ELMLMKIGEI 240 DSLGEIVEAV NMITDYVNSN PLALKLVRDQ DHSHGLLDMA VLSSEFEFFM PYLTVESIFR 300 ARDELAAMFA SSSDWNKEEE DIAISNLVND SRLWETVERV LKCSSPLIHG LIWLSSANNN 360 QHVGHVYDNM DVIKESIARE FDNDELCYMP LWDVIDDVWN KLHSPLHAAG YFLNPAAFYS 420 TGFHLDTEVA IGLISSLVHI VKELDVQVKV ATQLDVYKVR EGCFNETSQA DQVSGLSPAE 480 WWAEKASQHP ELQSFAIKVL SQTCEGASRY MLKRRVAEKL LLTRGMSRCE KQHLEELAFV 540 HYNLHLLIYR AAEPN

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MDIHEHGVLV GKEKRRRIQC KHCGKQMSGW YRLRHHLSGV GGDATPCVQV TSSVREMFRT  60
TTTGPKRGRT GDSEHVWCSY PNCLDFSSNG FREIMMTVSG RTIPDPHGSM FGEVLKEVED  120
HVEKVKDSWG VTGCSILLDA WVDHKGHDLV TFVADSPAGS VYLKSFDVSD IKHDSEALIS  180
IVDGLVDEVG VSNVVQIVAC SASGWVGELG EAYVGTKKGV FWSVSVSHCF ELMLMKIGEI  240
DSLGEIVEAV NMITDYVNSN PLALKLVRDQ DHSHGLLDMA VLSSEFEFFM PYLTVESIFR  300
ARDELAAMFA SSSDWNKEEE DIAISNLVND SRLWETVERV LKCSSPLIHG LIWLSSANNN  360
QHVGHVYDNM DVIKESIARE FDNDELCYMP LWDVIDDVWN KLHSPLHAAG YFLNPAAFYS  420
TGFHLDTEVA IGLISSLVHI VKELDVQVKV ATQLDVYKVR EGCFNETSQA DQVSGLSPAE  480
WWAEKASQHP ELQSFAIKVL SQTCEGASRY MLKRRVAEKL LLTRGMSRCE KQHLEELAFV  540
HYNLHLLIYR AAEPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	17	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009124697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124697.1	0.0	PREDICTED: uncharacterized protein LOC103849730
TrEMBL	A0A3P5ZQ20	0.0	A0A3P5ZQ20_BRACM; Uncharacterized protein
STRING	Bo1g138700.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3105	3	4