PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124974.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 353aa    MW: 39293.1 Da    PI: 6.135
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.82.5e-3693189297
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     lfqrlw++eDei lL+G++d+ ++++g s   d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k  sgke+ f+++hdq++fe+s+ki
  XP_009124974.1  93 LFQRLWTDEDEIELLRGFLDYvTTHRGGSNPPDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVLFKSPHDQSTFEISRKI 187
                     79*******************88889989999*************************************************************** PP

          DUF573  96 Wg 97 
                     W+
  XP_009124974.1 188 WN 189
                     *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-3394189IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSDHRDAVF SIESPDHEGG ESDTDDDVAL PEANDDLNSP SNVTVALPSG SSAVPVSVIP  60
ADSSPKLHHR TTEIVHRRQQ PPPPAAIDDS RRLFQRLWTD EDEIELLRGF LDYVTTHRGG  120
SNPPDTAPFY EMIKSKLQLE FNKNQLVEKL RRLKKKYRNV MSKFGSGKEV LFKSPHDQST  180
FEISRKIWNR TGKIIGFEMD FEVNGNSPGS NPSAAVEIES ENGVEKKGSR KRSRSRIGKI  240
EEDNNVNVNV NETVSSSIGG LIEETVRSCV SPLIKEMMNG TTSMMMAGSL GPVFTRSLGY  300
GLEGGGGGNK AVRDERWRKQ QILELEVYSR RLELVQEEIR ATLHELKTMP SGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124974.10.0PREDICTED: probable transcription factor At3g04930 isoform X1
RefseqXP_018512504.10.0PREDICTED: probable transcription factor At3g04930 isoform X2
SwissprotQ9CAV71e-151STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A3P6GAA70.0A0A3P6GAA7_BRAOL; Uncharacterized protein
STRINGBo1g151840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-138DNA-binding storekeeper protein-related transcriptional regulator