PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125010.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21186 Da    PI: 9.0425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.51.9e-191362150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k +e++ nr +tfskR++gi+KK +EL  LC++e+a + fs+tgk ++++
  XP_009125010.1 13 KEVEDYENRMTTFSKRKTGIFKKMNELVALCGVEAAFVAFSETGKSHTFA 62
                    5789*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-22564IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-22574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.665565IPR002100Transcription factor, MADS-box
CDDcd001202.94E-25664No hitNo description
PRINTSPR004042.4E-15727IPR002100Transcription factor, MADS-box
PfamPF003193.5E-201561IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-152742IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-154263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKNTKGKQKI EMKEVEDYEN RMTTFSKRKT GIFKKMNELV ALCGVEAAFV AFSETGKSHT  60
FAHPSMEDAA GRLKSPLIDE SPRKDDTNTD SLVGAYKSQK NEDLKKLYAD FAEELEMEKE  120
KEKKLKKSKS DKRFDKMWWN AEGLSVEERK QLHQRFVELN VTLCGKVSQQ FRKDGDGSDL  180
AGHGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125010.11e-135PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A398AVS31e-133A0A398AVS3_BRACM; Uncharacterized protein
STRINGBra040149.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-44AGAMOUS-like 57