PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125011.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 357aa    MW: 40849.7 Da    PI: 7.3878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52101401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+kkv++ +++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + 
  XP_009125011.1  10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVP 103
                     79****************************.89***************988899**************************************998 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  XP_009125011.1 104 nregFNENIGIKKALVFYTGKPPKGVKTNWIMHEYRL 140
                     55554556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-607186IPR003441NAC domain
PROSITE profilePS5100558.75610186IPR003441NAC domain
PfamPF023657.9E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNREGFNE NIGIKKALVF  120
YTGKPPKGVK TNWIMHEYRL AESLSPKRVA HARNGSQVNN LGDRTLKSTE YSMRLDDWVP  180
CRIYKKSHAS LSSPEVASAT SEDQEHEEND NEPFVVSETL LPNLANDQTL KRQQSSFSNL  240
LDATDLTFLT NFLNETPENR TESEFSFLFG DFSNPDIYRN RYLGHKLPQL SSPTSETRVI  300
GNKRERVDYA EEMMNNSKKI NNFSYNNSID HLDHSLIQQS SFLNQELLIS PHLKYQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-70919016169NO APICAL MERISTEM PROTEIN
1ut4_B6e-70919016169NO APICAL MERISTEM PROTEIN
1ut7_A6e-70919016169NO APICAL MERISTEM PROTEIN
1ut7_B6e-70919016169NO APICAL MERISTEM PROTEIN
3swm_A6e-70919019172NAC domain-containing protein 19
3swm_B6e-70919019172NAC domain-containing protein 19
3swm_C6e-70919019172NAC domain-containing protein 19
3swm_D6e-70919019172NAC domain-containing protein 19
3swp_A6e-70919019172NAC domain-containing protein 19
3swp_B6e-70919019172NAC domain-containing protein 19
3swp_C6e-70919019172NAC domain-containing protein 19
3swp_D6e-70919019172NAC domain-containing protein 19
4dul_A6e-70919016169NAC domain-containing protein 19
4dul_B6e-70919016169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125011.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747600.0KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125011.10.0PREDICTED: NAC domain-containing protein 67-like
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLM4FGC40.0M4FGC4_BRARP; Uncharacterized protein
STRINGBra040152.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]