PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125012.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 346aa    MW: 38456.9 Da    PI: 6.4236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52201481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtd e++ +yLk+kv + +++   +i ++d++k ePwdLp k k+++  +e yfF++rd+ky+tg r+nrat sgyWkatgkdke++
  XP_009125012.1  20 LPPGFRFHPTDAEIIIHYLKEKVFNVRFTS-AAIGQADLNKNEPWDLPsKsKIAKMGEEFYFFCQRDRKYPTGMRTNRATLSGYWKATGKDKEIF 113
                     79*************************999.78**************9524666677799*********************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + kg  vg+kktLvfy+grapkgekt+Wvmheyrl
  XP_009125012.1 114 RGKGCFVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 148
                     *99999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-5817174IPR003441NAC domain
PROSITE profilePS5100556.54220173IPR003441NAC domain
PfamPF023651.8E-2721148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLEEGGVVVN QGGDQEVVDL PPGFRFHPTD AEIIIHYLKE KVFNVRFTSA AIGQADLNKN  60
EPWDLPSKSK IAKMGEEFYF FCQRDRKYPT GMRTNRATLS GYWKATGKDK EIFRGKGCFV  120
GMKKTLVFYR GRAPKGEKTN WVMHEYRLDG IYSYHNLPKT ARDEWVVCRV FHKNAPPPTT  180
TATTTTTNQL TRIDSLDNID HLLDFSSLPP LIDPGFLSQP GPSFSGAGQQ HDFKPIPHHP  240
TTVQINNTYP SAQTLTYPYN SVPNYGFGSG YGTGSGNNNN GMIKLENSLV SVSQETGLSS  300
DVNTTATPEI SSSYPGMVNT AANAAMMDGN KTSYDDDDLG IFWDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-471817515167NO APICAL MERISTEM PROTEIN
1ut4_B6e-471817515167NO APICAL MERISTEM PROTEIN
1ut7_A6e-471817515167NO APICAL MERISTEM PROTEIN
1ut7_B6e-471817515167NO APICAL MERISTEM PROTEIN
4dul_A6e-471817515167NAC domain-containing protein 19
4dul_B6e-471817515167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125012.10.0PREDICTED: NAC domain-containing protein 79-like isoform X1
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLM4FGC50.0M4FGC5_BRARP; Uncharacterized protein
STRINGBra040153.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]