PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125018.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31529 Da    PI: 5.9169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2063116356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e++++LA+klgL+ rqV vWFqNrRa++k
  XP_009125018.1  63 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWK 116
                     56689************************************************9 PP
2HD-ZIP_I/II1291.9e-4163154293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+++qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+e+++
  XP_009125018.1  63 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSEVTS 154
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-2048120IPR009057Homeodomain-like
PROSITE profilePS5007117.78358118IPR001356Homeobox domain
SMARTSM003897.0E-1961122IPR001356Homeobox domain
CDDcd000862.27E-1763119No hitNo description
PfamPF000461.1E-1763116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-2165125IPR009057Homeodomain-like
PRINTSPR000317.9E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.9E-698114IPR000047Helix-turn-helix motif
PfamPF021834.1E-15118160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESNSFFFDP SLSHGNMFFL NPAAVQEAKS MMTTEESSKR RPFFCSHEDL YDDDYYDDHT  60
PDKKRRLTSQ QVHLLEKSFE TENKLEPERK TQLANKLGLQ PRQVAVWFQN RRARWKTKQL  120
ERDFNLLKSS YDQLLSNYDS ILKDNHLLRS EVTSLVEKLQ AKEDTTNKPP GQVPEANPQQ  180
QLHPVNMNQI ELPIKTEDRL SSGSTVLDED DAPQLLDSCN SYFPIIAPIH HSEGHNNRNG  240
SVNDRSCFVD VFVPTTSPPH GHGHGESLGF WGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125018.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022831e-126HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLM4FHE10.0M4FHE1_BRARP; Uncharacterized protein
STRINGBra040519.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-129homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]